Index A | B | C | D | E | F | G | H | I | L | M | N | P | R | S | T | V | X | Z A adata (networkvi.model.NETWORKVI attribute) adata_manager (networkvi.model.NETWORKVI attribute) add_module() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) apply() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) B bfloat16() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) buffers() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) C calculate_covariate_attention() (networkvi.model.NETWORKVI method) call_super_init (networkvi.nn.GeneLayers attribute) (networkvi.nn.GOLayers attribute) children() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) compile() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) convert_legacy_save() (networkvi.model.NETWORKVI class method) cpu() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) cuda() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) D deregister_manager() (networkvi.model.NETWORKVI method) device (networkvi.model.NETWORKVI attribute) differential_accessibility() (networkvi.model.NETWORKVI method) differential_expression() (networkvi.model.NETWORKVI method) double() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) dump_patches (networkvi.nn.GeneLayers attribute) (networkvi.nn.GOLayers attribute) E eval() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) extra_repr() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) F float() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) forward() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) G GeneLayers (class in networkvi.nn) get_accessibility_estimates() (networkvi.model.NETWORKVI method) get_anndata_manager() (networkvi.model.NETWORKVI method) get_buffer() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) get_ds_terms_and_parents() (networkvi.nn.GOLayers method) get_elbo() (networkvi.model.NETWORKVI method) get_extra_state() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) get_from_registry() (networkvi.model.NETWORKVI method) get_geneobj() (networkvi.nn.GeneLayers static method) get_go_gene_importances() (networkvi.model.NETWORKVI method) get_goobj_info() (networkvi.nn.GOLayers method) get_latent_representation() (networkvi.model.NETWORKVI method) get_library_size_factors() (networkvi.model.NETWORKVI method) get_marginal_ll() (networkvi.model.NETWORKVI method) get_n_parameters() (networkvi.nn.GOLayers method) get_neurons_available() (networkvi.nn.GOLayers method) get_normalized_expression() (networkvi.model.NETWORKVI method) get_ordered_gos() (networkvi.nn.GOLayers method) get_overflow_info() (networkvi.nn.GOLayers method) get_parameter() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) get_parents() (networkvi.nn.GOLayers method) get_perturbation_go_gene_importances() (networkvi.model.NETWORKVI method) get_protein_foreground_probability() (networkvi.model.NETWORKVI method) get_reconstruction_error() (networkvi.model.NETWORKVI method) get_region_factors() (networkvi.model.NETWORKVI method) get_sizes_by_level() (networkvi.nn.GOLayers method) get_submodule() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) get_total_size() (networkvi.nn.GOLayers method) GOLayers (class in networkvi.nn) H half() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) history (networkvi.model.NETWORKVI attribute) I initialize_go_obj() (networkvi.nn.GOLayers method) ipu() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) is_trained (networkvi.model.NETWORKVI attribute) L load() (networkvi.model.NETWORKVI class method) load_query_data() (networkvi.model.NETWORKVI class method) load_registry() (networkvi.model.NETWORKVI static method) load_state_dict() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) M modules() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) mtia() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) N named_buffers() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) named_children() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) named_modules() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) named_parameters() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) NETWORKVI (class in networkvi.model) P parameters() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) patch_bup_ontology() (networkvi.nn.GOLayers method) prepare_query_anndata() (networkvi.model.NETWORKVI static method) R register_backward_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_buffer() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_forward_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_forward_pre_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_full_backward_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_full_backward_pre_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_load_state_dict_post_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_load_state_dict_pre_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_manager() (networkvi.model.NETWORKVI class method) register_module() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_parameter() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_state_dict_post_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) register_state_dict_pre_hook() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) requires_grad_() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) S save() (networkvi.model.NETWORKVI method) set_ensemblids() (networkvi.nn.GOLayers method) set_extra_state() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) set_layersize() (networkvi.nn.GOLayers method) set_layersize_dynamic() (networkvi.nn.GOLayers method) set_submodule() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) set_topnode_and_unknown() (networkvi.nn.GOLayers method) setup_anndata() (networkvi.model.NETWORKVI class method) share_memory() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) state_dict() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) summary_string (networkvi.model.NETWORKVI attribute) T T_destination (networkvi.nn.GeneLayers attribute) (networkvi.nn.GOLayers attribute) test_indices (networkvi.model.NETWORKVI attribute) to() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) to_device() (networkvi.model.NETWORKVI method) to_empty() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) train() (networkvi.model.NETWORKVI method) (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) train_indices (networkvi.model.NETWORKVI attribute) training (networkvi.nn.GeneLayers attribute) (networkvi.nn.GOLayers attribute) type() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) V validation_indices (networkvi.model.NETWORKVI attribute) view_anndata_setup() (networkvi.model.NETWORKVI method) view_setup_args() (networkvi.model.NETWORKVI static method) X xpu() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method) Z zero_grad() (networkvi.nn.GeneLayers method) (networkvi.nn.GOLayers method)